![]() ![]() net/software/csrosetta3/com_alias/setup_target # for instance this might be the answer $ which setup_target # to figure out where the csrosetta toolbox is installed on your system Nevertheless, a toolbox command still exists to carry out this task renumber_upl -fasta SgR145.fasta 1.2 Obtaining the Input Files from Tutorial FolderĮither run this tutorial directly in the toolbox folder or link this folder into your current folder like this: For the upl-files renumbering is not necessary anymore as the automated setup will take care of this. See also Tutorial: Fragment Picking with Chemical Shift Data for trimming and renumbering. These files are all in consistent residue numbering starting with 1 for the trimmed sequence. Upper limit distance restraints (output from a CYANA run)įor convenience these input files are also stored in the toolbox-folder csrosetta3/tutorials/inputs. Upper limit distance restraints (from NOE data) RDC data file obtained in 2nd alignment medium (truncated) FASTA sequence for NESG Target SgR145 ![]() ![]() The inputs for this tutorial are the following files: SgR145.fasta Preparation of Input Files: 1.1 List of Input Files Due to the length of this article it has been broken down into multiple pages, see book navigation block. Please review the basic tutorials Tutorial: Standard CS-Rosetta and Tutorial: RASREC CS-Rosetta to refresh your knowledge how to set up calculations without any restraint data. This tutorial explains how to add restraints from RDC and NOE data to your abrelax CS-Rosetta or RASREC CS-Rosetta calculation. ![]()
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